PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004510544.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

Trihelix

Protein Properties

Length: 356aa MW: 39571.4 Da PI: 9.6556

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004510544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48	3.3e-15	66	155	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + Liea e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k+ + ++s++p++d+l+ XP_004510544.1 66 CWSEGATAILIEAWGERYLELSRGNLKQKHWKEVAEIVngreDYVKVPKTDIQCKNRIDTVKKKYKSEKAKIAAGGIITTSKWPFYDKLD 155 7***********************************9855556677899****************9999888899*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-25	64	157	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0010431	Biological Process	seed maturation

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDDDEIQSHS SPASGSPASS PGAIGRISVT VAAPAPMEQP AANSYALALP IQNQTRGNNG 60 GGREDCWSEG ATAILIEAWG ERYLELSRGN LKQKHWKEVA EIVNGREDYV KVPKTDIQCK 120 NRIDTVKKKY KSEKAKIAAG GIITTSKWPF YDKLDHLIGP AAKISGVSAT GKSNLPQQKV 180 PVGFRPNQFN PEKKIQHQQV DLKYQKVHLR PRVPPVDSDS SEKEALSPIS SDSFPPEGCE 240 RKRAKVMKGR KGKGWGSSVM ELTDAIVKFG EAYEQAETSK LQQLVEMEKQ RMKFAKDLEL 300 QRMQFFMKTQ MEISQLKLGK KSCNTSKNHS NNNENSNNNH NHNNNSDNHN NNSDSE

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDDDEIQSHS SPASGSPASS PGAIGRISVT VAAPAPMEQP AANSYALALP IQNQTRGNNG  60
GGREDCWSEG ATAILIEAWG ERYLELSRGN LKQKHWKEVA EIVNGREDYV KVPKTDIQCK  120
NRIDTVKKKY KSEKAKIAAG GIITTSKWPF YDKLDHLIGP AAKISGVSAT GKSNLPQQKV  180
PVGFRPNQFN PEKKIQHQQV DLKYQKVHLR PRVPPVDSDS SEKEALSPIS SDSFPPEGCE  240
RKRAKVMKGR KGKGWGSSVM ELTDAIVKFG EAYEQAETSK LQQLVEMEKQ RMKFAKDLEL  300
QRMQFFMKTQ MEISQLKLGK KSCNTSKNHS NNNENSNNNH NHNNNSDNHN NNSDSE

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00356	DAP	Transfer from AT3G14180	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC152057	5e-48	AC152057.11 Medicago truncatula chromosome 8 clone mth2-25a12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004510544.1	0.0	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	4e-88	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	G7L8C7	1e-143	G7L8C7_MEDTR; Transcription factor
STRING	GLYMA07G04790.4	1e-120	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7919	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	9e-72	sequence-specific DNA binding transcription factors